There is no special "PCI disabled" mode, the PCI can be only "Not used". MPC8315 Design Checklist (application note AN3438), Section 7.1 contains special recommendations for termination of PCI pins in "If not used" case. Looking to PCI_AD[31:0], you can see that no termination required for these pins only if PCI bus is parked - PCI host mode is selected, PCI arbiter is enabled and bus is parked to PCI controller. In this case you do not need to pull-up PCI_AD[31:0] and some other PCI pins. So, the recommended mode for PCI not used is PCI Host, and clocking mode should be also for PCI host.
Direct link to AN3438 "MPC8315 Design Checklist":
https://www.nxp.com/docs/en/application-note/AN3438.pdf
Have a great day,
Alexander,
TIC
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