Hi @Rashmitha_Nair
Thank you so much for using our community. We are overloaded on the requests these days, I truly appreciate your patience.
Regarding your question, I realized that you opened another thread: (https://community.nxp.com/t5/Kinetis-Microcontrollers/FTM0-CH6-160-kHz-sync-with-FTM2-CH0-16-kHz-on-...) with more details and code snippet about what you are trying to achieve, so me and my teammate are going to work together so he can answer you there if you do not have any inconvenience.
So, please if you agree, please mark this answer as solution to close this request and we will still helping you on that thread. Please let me know your comments.
Thank you in advance.
Sincerely,
Pablo Avalos.