Here is a new tool to understand and configure the clocking system on the i.MX35x product. GUI complete with installation and user guide. We are working on getting it on the Freescale website but we will get out to the community as we wait.
It has come to my attention that Windows 7 seems to be left out of the picture as well. People can weigh in as needed but I would expect most users to be XP based. Thanks Jon for identifying this. Jesse Beeker said:
Additionally, if you used an installed to run the Alpha version, you will likely need to remove the older install using Control Panel >> Add/Remove Program. If the installer for future versions could provide a way to automatically remove the old one, I think that could make updating easier.