Hi Gary
basic pcie validation steps are described in
i.MX6Q PCIe EP/RC Validation System
please check that for Nitrogen6 correct image configuration is used
GitHub - boundarydevices/linux-imx6: Boundary Devices Kernel tree for i.MX6
as this is third party board, issue may be posted on meta-fsl-arm mailing list, so that someone
familiar with it could try to assist you.
https://lists.yoctoproject.org/listinfo/meta-freescale
Best regards
igor
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