A1: The S32 Configuration Tool has reminded you in red: Issue: Routing conflict on 'Routed pin/signal' item.
A2: 82.12.1 Debug port and pin descriptions
The pads to which the debug signals are mapped operate using the JTAG functionality out of reset but can later be reassigned to their alternate functionalities. TDI and TDO can operate as alternate GPIO functions. See this table for pin assignments in different modes.
If you do not configure the JTAG pins in the S32 Configuration Tool, these pins will default to the JTAG function.

Best Regards,
Robin
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