Hello there !!
I've anticipated a problem quite a few times now. I did change configurations regarding peripherals of S32K344 and the "update code" does only update the .mex file of the project.I'm attaching some screenshots regarding this matter.
A work around this problem is to create a new project and do all the configurations from the beginning but as you can understand this is time consuming and more specific development time consuming .
Some observations of mine are:
1. I believe that this occurred after I've changed the functional group name from BOARD_InitPeriph to FG0.

2. An other thing that I've noticed is that the folder generate is crossed and not in the supposed to be position.

3. Folder generate is crossed. Why is this happening ? How can I change this ?

Is there any option that enable/disable "update code" ??
Kind regards,
kyf