Check that pin multiplexing is correct on your board. See the IIC3_SCL in the SCFG_RCWPMUXCR0 register.
Check your command sequence using the Section 34.4.3.1 and the Table 34-9 from the LS1046A Reference Manual:
https://www.nxp.com/webapp/Download?colCode=LS1046ARM
Have a great day,
Pavel Chubakov
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