Hi Paul,
As per your suggestion, mbdtbx_MPC574xP, MakefileBuilder.p hot fixes are applied and now the above issue is resolved. But when we run a model in PIL mode, below issue encountered.

Tools version used by me given below.
Matlab – 2016b
MBDToolBox – V2.0.0
S32 Design Studio – V1.2
We have also applied HotFix_1 to HotFix_6 as per below link, after that I have applied your hot fix.
https://community.nxp.com/thread/451804
I have attached my simple test model I have created to test PIL environment, but still face issue could please tell me what is the issue or am I missing some settings still.