Hi Daniel,
Yes, it shows all hall transitions reading PTA13, PTA12 and PTD6.
The problem was that when using input edge capture block, FTM2 only lets to configure PTB18 and PTB19 pins in capture mode.
PTA12 and PTA13 can be configured in FTM1, but it is not possible to set PTD6 in capture mode.
This solved my problem, thank you very much!
Mikel.