Hello,
We have multiple boards 1060 and 1064 with similar issues after making changes in MCU Settings.

See Log on Console:
[Started server]
[Connected on port 3025]
redlink> ProbeList
Index = 1
Manufacturer = ARM
Description = DAPLink CMSIS-DAP
Serial Number = 022900003351595a00000000000000000000000097969905
VID:PID = 0D28:0204
Path = \\?\hid#vid_0d28&pid_0204&mi_03#7&ccf2e66&0&0000#{4d1e55b2-f16f-11cf-88cb-001111000030}
redlink> ProbeStatus
Index = 1
Manufacturer = ARM
Description = DAPLink CMSIS-DAP
Serial Number = 022900003351595a00000000000000000000000097969905
VID:PID = 0D28:0204
Path = \\?\hid#vid_0d28&pid_0204&mi_03#7&ccf2e66&0&0000#{4d1e55b2-f16f-11cf-88cb-001111000030}
IsOpen = FALSE
WireInitialized = FALSE
WireProtocol = JTAG
CoresConfigured = FALSE
PacketSize = 64
Reference Count = 0
HasSWV = FALSE
HasETM = FALSE
HasJTAG = TRUE
HasSWD = TRUE
Probe Type = CMSIS-DAP
Probe Reference Count = 0
redlink> ProbeIsOpen 1
FALSE
redlink> ProbeOpenByIndex 1
Probe Handle 1 Open
redlink> WireIsConnected 1
FALSE
redlink> WireSwdConnect 1
DpID = 0BD11477
redlink> CoresConfigured 1
TRUE
redlink> CoreList 1
Error: Wire Ack Fault - target connected?
redlink> ProbeStatus
Index = 1
Manufacturer = ARM
Description = DAPLink CMSIS-DAP
Serial Number = 022900003351595a00000000000000000000000097969905
VID:PID = 0D28:0204
Path = \\?\hid#vid_0d28&pid_0204&mi_03#7&ccf2e66&0&0000#{4d1e55b2-f16f-11cf-88cb-001111000030}
IsOpen = TRUE
WireInitialized = TRUE
WireProtocol = SWD
CoresConfigured = TRUE
PacketSize = 64
Reference Count = 0
HasSWV = FALSE
HasETM = FALSE
HasJTAG = TRUE
HasSWD = TRUE
Probe Type = CMSIS-DAP
Probe Reference Count = 0
redlink> ProbeStatus
Index = 1
Manufacturer = ARM
Description = DAPLink CMSIS-DAP
Serial Number = 022900003351595a00000000000000000000000097969905
VID:PID = 0D28:0204
Path = \\?\hid#vid_0d28&pid_0204&mi_03#7&ccf2e66&0&0000#{4d1e55b2-f16f-11cf-88cb-001111000030}
IsOpen = TRUE
WireInitialized = TRUE
WireProtocol = SWD
CoresConfigured = TRUE
PacketSize = 64
Reference Count = 0
HasSWV = FALSE
HasETM = FALSE
HasJTAG = TRUE
HasSWD = TRUE
Probe Type = CMSIS-DAP
Probe Reference Count = 0
redlink> ProbeCloseBySerial "022900003351595a00000000000000000000000097969905"
Probe Handle 1 Closed
0x5, Wire Ack Fault - target connected?
redlink> quit
[Closed]
=============
Thanks
Manish