Default configuration in u-boot for the SCFG_USBPWRFAULT_SELCR register is 0x2900_0000 (big-endian).
It means that USB1, USB2 and USB3 controllers receive PWRFAULT from dedicated USBx_PWRFAULT I/O.
The USB3_PWRFAULT signal is not used and this pin is assigned to TDMB_RQ. See the LS1043ARDB schematic.
Use the following command in u-boot:
mw 0x1570414 0x09000000
This command sets 0b00 for USB3:
00 - USB controller 3 has its PWRFAULT input tied inactive (no fault)