Hi @jean-marcrouxel
Hoping you are doing well.
The answer to your question is yes, you can use the glitch filter on the SPI-bus by enabling the corresponding bits in the IOCON register.
Please take in consideration that SPI glitch filter is only a 50ns glitch filter.
You can refer to the pages 685-686 on the user manual for this part number: User Manual LPC55S69
I hope this is what you are looking for, please let me know If you have more questions.
Sincerely,
Pablo Avalos.