Hi ZhaiYF
There are two type of input for SCT, the the 100MHz clock limitation is only valid for the clock source inputted from external pads (SCT_IN7), if you use system clock as the SCTimer/PWM clock source, the system clock frequency can be greater than 100MHz.
ZhangJennie_0-1640610687604.png
You can also see this "Remarks " immediately below "Select a function clock using SCTCLKSEL (Section 7.5.41)."
ZhangJennie_1-1640610889410.png
Hope this helps,
Jun Zhang