Hi Shawn Mason
Sorry for the late reply. It is difficult to us determinate the problem here if we don't have knowledge of how you setup the ADC conversions. How are you setting your sample time? and how is your Base conversion time? is it possible that you share your complete project or the part that setup your ADC conversion?
I recommend you to check section 31.4.3.5 Sample time and total conversion time in the reference manual. Here you could find:

So, ConversionTime could be affected by time added due to long sample or High-speed.
Hope this information help you, please don't hesitate to tell me if you have more question of this.
Best Regards
Jorge Alcala