Hi,
1> I am checking with Kinetis product team to get the question 1 answer. I will let you know later;
2> The SCG module provides the system crystal oscillator, the SCG_SOSCCFG_SCxP and SCG_SOSCCSR_SOSCEN registers bits used to control the system crystal oscillator.
The RTC module register doesn't have related 32KHz oscillator, the related capacitor load bit has no function. The RTC used OSC32KCLK is from SCG output from the SOSC.
More detailed info, please check KL28 reference manual chapter 5.8.1 OSC32KCLK.
3> It is the same clock source of SCG ERCLK (clock from EXTAL0 pin). The 3V means the KL28 system OSC is 3V chip, which doesn't support 5V clock input.

Have a great day,
Ma Hui
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