Hi @prathamvora ,
Thank you so much for your interest in our products and for using our community.
A1: LinkServer CLI .scp scripts device JSON files
LinkServer is NXP’s standalone GDB server and flash programming tool. It can be used outside the MCUXpresso IDE.
LinkServer for Microcontrollers | NXP Semiconductors
https://www.nxp.com/docs/en/user-guide/UG10219.pdf
You can view all available command-line options by running:
linkserver --help
linkserver gdbserver --help
linkserver flash --help
The .scp script files are used by LinkServer to control connect, reset ,and so on.
you can open the RT700_reset.scp script to examine the structure and commands used for reference.
You can find device JSON under:
C:\nxp\LinkServer_25.12.83\devices\ MIMXRT700-EVK.json
The JSON file contains definitions for memory map, flash regions, flash drivers...
A2: Purpose of the .flash_config section
Could you clarify where you saw the .flash_config section?
For RT700 I strongly recommend reviewing this application note:
AN14821 – RT700 Secure Boot and Image Structure
https://www.nxp.com/webapp/Download?colCode=AN14821&location=null&isHTMLorPDF=HTML
This AN explains the image header, boot flow, and memory layout required for RT700 secure and non-secure images.
A3: Signing tools for RT700 secure boot
For signing RT700 images, the recommended tool is:
MCUXpresso Secure Provisioning (SEC) Tool
This tool provides GUI workflow, and Full command-line interface , Support for image signing, certificate handling...
For more detail information, you can refer to the below link.
MCUXpresso Secure Provisioning Tool Documentation
https://docs.mcuxpresso.nxp.com/secure/latest/06_processor_specific_workflow.html#id13 
Wish it helps you
Best Regards
Mayliu