Maybe my question was not clear enough. You see that pinctrl is configuring SS pin to be in GPIO mode, although another alternative for that pad can also be SPI SS mode.
Intuitively, for me, the way it is now, it sounds like any GPIO can be used as SS, because the driver will emulate it and that's why we configure it in GPIO mode. On the other side, if SPI controller uses genuine SS pin dedicated for that purpose, it should be configured in SS mode, so instead
MX6QDL_PAD_EIM_D19__GPIO3_IO19
The option
MX6QDL_PAD_EIM_D19__ECSPI1_SS1
should be used. But it isn't.