Hello Matthias,
The linker script is an example, as the syntax and content is likely related to the compiler/linker.
If it is the one in u-boot, then you will need to get the u-boot from a git repository or the linux BSP that you can download from the Freescale web site.
I guess that you need to get familiar with u-boot first, and then you will be able to add the necessary pieces required for a secure boot. You can surely find support on u-boot in the related community.
Typically, the linker script is here:
./board/freescale/mx28_evk/u-boot.lds
The idea with the linker script is to reserve some space for the security related data used during boot. By adding this, it is therefore possible to automatically resolve the address that must be provided to the Image Vector Table (IVT).
That is the entry point for the ROM code of the i.MX28 to find each elements needed for the boot.
You can get more information in the chapter "Boot modes", and "program image" of the reference manual.
If you look at the figure 5 in the app note, the signed part is typically from start of the IVT to the end of the image data. That gives you the start address and size of the code.
./board/freescale/mx28_evk/config.mk (start address where u-boot will be linked).
Florent