Hello @dylanrd
I hope you are doing very well.
It should be possible to at least flash the bootloader to i.MX8MP, but unfortunately we have not any script example with the memory map and process to achieve it. NXP supports and recommend to use the UUU tool (USB Serial Download).
When customer wants avoid to use the USB Serial Download, it is recommended to contact to the chip vendor (eMMC vendor) to get it with a flashed image.
About of Low voltage and Reset pin issues, it is possible you have hardware issues. You can refer to the Schematics of the i.MX8MP to compare the JTAG connector and if possible test with an EVK.
Best regards,
Salas.