Hi @mimlo
Thank you for your reply!
I have more details about the Linkserver and .scp script option I mentioned earlier. The .scp files are used by linkserver. If you debug/program a project using the MCUXpresso IDE and an NXP debug probe, running CMSIS DAP. You will see the execution of a connect script .scp. Below an example.

This sample log on the terminal comes from Using the GUI Flash Tool, embeded on the IDE with a customized .scp file. This time using i.MX RT1020

On simple terms, this customized .scp allows you to use a NXP debug probe to read registers of the MCU and print their value on the terminal.

The customization came from adding extra code lines to the default, RT1020 scp file to read UUID value, Boot_CFGx registers and another register, the SRC_SBMR2, which reflects the value of the boot mode pins.

The UUID and Boot_CFGx registes are not actual OTP fuses, they are shadow registers, that can be easily accessed. So far Linkserver, or NXP debug probes does not provide a way to burn fuses for the i.MX RT. As seen in this example, you could read shadow registers easily.
If you want to program fuses easily, over SWD using Segger-s J-Link, you can use .jlinkscript or flashloader to implement fuse programming. Additionally and derived from that you could explore on your own, other options. Our FAE colleague Calvin Ji had created one J-Link flashloader with fuse programming feature https://github.com/jicheng0622/All-in-One-Flash-Algorithm-for-NXP-i.MXRT
I hope this could help you!
Diego