Hi Nicolò,
Seems that you are using S32K116EVB2Q048 instead of S32K116EVB-Q048. How is the jumper selection? J10 and J104 and J107.
Please check if the voltage provide PE Multilink FX same as the selection of J10.(You don't need to provide the power, just use the on board 5V is ok. connect 2-3 J10)

Since you have external PE Multilink FX, you don't need to power the OpenSDA by J7. And you can connect 1-2 of J104, route the reset signal(SW5) direct to the MCU.
Please try to use P&E Recovery Utility halt MCU. refer:Can't use PEmicro debugger with S32K118EVB2-Q048
Best Regards,
Robin
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