Hi @Ajul
I made a simple test code with the PIT0 CH 2 of the S32K3X4EVB-Q172, where it toggles a GPIO pin when the PIT notification is called every 400µs and 200µs.
VaneB_0-1687986481737.png
VaneB_1-1687986491505.png
As you can see in the images, time remains relatively constant, it only has a slight deviation.
Your delay variation may be due to your FXOSC or, in the case of using the S32K internal oscillators, these are not precise. I recommend you verify this part and additionally, I share a screenshot of how I have AIPS_SLOW_CLK configured.
VaneB_2-1687986921942.png