I encountered the similar problem, create a new project, generate code from PE, and build, then a lot of problems occur, probably the generated code is empty, but i don't know why.
actually I never saw such issue before. I tried reproduce it, but on my machine everything works okay. So, you can try uninstall and install S32DS again - if you require this old version.
The latest S332DS version is - https://community.nxp.com/docs/DOC-345517
I've tried uninstall and install S32DS again, but the result is still the same.
Now I'm trying to install the latest S332DS version, hope there will be good news...