JTAG clock speed is configured in:
Edit - Preferences - Remote connections - (select your debug probe from list) - Change
Checkbox "Use JTAG configuration file" and file below - is not related to JTAG speed, it configures JTAG chain configuration - how many items you have in chain, and its JTAG register length. If you have only one processor in JTAG chain, this checkbox is not necessary.
Have a great day,
Alexander
TIC
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