Thanks a lot Daniel for your time and information.
I'd gone through AN11783 and the more complete one AN11145 already. I also went through the whole document of CLRC663, read few threads, studied and tested NXP complete library and worked with NFC Cockpit as well during implementation and recently and here is what I found.
Unfortunately information provided in documents and library is insufficient. Moreover, for the key parts like I, Q channel behavior and how they are affected in loaded and no load condition there is not enough helpful information. Furthermore, you can see misleading discrepancy between NXP library and AN11145 and NFC Cockpit and here is how:
While calibrating and reading I and Q Values:
In AN11145, section 3.2.1 Reading I and Q values, there is a sample code which works indeed. This code does not utilize charge pump and when enabling LPCD it does not enable Standby bit. Now, when you enable charge pump you will read two different values for I and Q if you enable or disable standby bit while executing LPCD command, This is the door that all issues come in. For example if you disable standby bit I=34, Q=24 and if you enable standby bit you read I=28 and Q=42. This is very big difference and cause all subsequent problems I face.
Now, after reading calibration values with disabled standby bit (default suggestion) when you go and set all registers and ask for LPCD with Standby mode, immediately you receive RF interrupt because I channel is set to 35 with threshold and Q channel to 24 but detected values during LPCD|STB are 28 and 42 so it causes to send LPCD interrupt. This will not happen if you calibrate with STB bit enabled. In summary there has to be complete similarity between calibration method and going to LPCD mode.
I've seen other differences between Cockpit default settings and NFC library and documents which are out of this discussion.
Thank you again.