Hi Roger,
I don't think i'm getting what you are trying to do.
So the encoder IC will have 3 outputs: A, B and INDEX
A and B signal are quadrature signals and can help you identify the direction and number of counts.
The INDEX is a signal generated only one per rotation period to signal a rotation completion. In the software you can use the eTimer CAPTURE to get high-to-low or low-to-high transitions of this signal. Have a look at this video starting with 3.20 minute: Video Link : 7832
Nonetheless, you may or may not chose to use the INDEX in your algorithm. Since the encoder is a relative type of sensors - you will need to start the movement from a well defined position - usually in industry this is done by aligning the motor rotor with phase A: first you force the rotor to align with B phase and then you polarize the A phase and the rotor will be force to be aligned with that.
Then you start to count the relative counts for A/B signals. To know when a rotation is complete (emulate the INDEX) you can do a MODULO with the number of count per revolution given by your encoder.
This way there is no need for the third input INDEX
Anyhow - we will consider your feedback in case we will to an update for the MPC5744P toolbox. This request is logged as AST-648
I hope you can figure it out and resolve the application with the actual support level from the Toolbox.
Best regards,
Daniel