Hi Fernando,
If I understand your issue correctly - you are trying to connect with FreeMASTER via LPUART.
In fact FreeMASTER can use any LPUART channel and any pins routed to LPUARTx module.
Just select which pins you want to use for Rx,Tx and the configuration of LPUART base address can be changed easily in freemaster_cfg.h:
#define FMSTR_SCI_BASE 0x4006C000UL
#define FMSTR_CAN_BASE 0x40024000UL
#define FMSTR_DISABLE 0
#define FMSTR_USE_LPUART 1
#define FMSTR_USE_FLEXCAN 0
#define FMSTR_USE_PDBDM 0
In your project you have to set the pinmux of selected pins to LPUART Rx,Tx function.
It is also your responsibility to initialize appropriate LPUART module - this is out of FreeMASTER scope.
Hope it helps.
Stan