There are significant differences between SPC5606BF and SPC5606BK and they are covered in the following appnote:
https://www.nxp.com/docs/en/application-note/AN4477.pdf
Note that
SPC5606BF = mask 1M03Y
SPC5606BK = mask 01N3E
Also it may be because of CW10 is not updated and it is also related to PeMicro drivers included in it.
PeMicro has a tool called PROGPPCNEXUS. It is flash programmer and with this you can do all these operations. In the attached screenshot you can see how to upload MCU memory content into s19 file (S-record) and with this tool you can also erase the chip and program it.
PeMicro offers their own debugger (called 64K Starter Edition of P&E's PKGPPCNEXUS. Trial version is free (it is needed to be registered and logged in), programmer is part of the package:
http://www.pemicro.com/downloads/download_file.cfm?download_id=194
For further detail I would recommend to contact PeMicro support:
https://www.pemicro.com/support/index.cfm