Disabling a core is equivalent to stopping its internal clocks (PW15 low power state).
Estimated power saving from moving a core into PW15 state is provided in the QorIQ LS1043A, LS1023A Data Sheet, 3.5 Low power mode saving estimation.
For the LS1043A the saving is not significant, so there will be very small benefit in disabling cores.
Considering aforesaid it is needed to implement a heatsink having better cooling capabiliy.