Hi,
After check your schematic file, I found a resistor between Vbat and 3.3v, we suggest to connect the vdd lines according the following figure.
In addition, I would recommend that RTCX1 be grounded since it is an input. RTCX2 is an output, so it can be left open.

Do you have more than one board? If yes, is this issue present in all boards?
Is it possible to do a X ray test?
Have a great day,
Sol
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