Hi,
1.How do I verify that the system has gone into deep sleep mode ??Similarly how to verify that the system has woken up from sleep?
>>You can toggle a LED in the main loop with a delay() function. After you enter deep sleep mode, the led does not toggle. After waking-up, the LED continues to toggle.
2.By default does all the peripheral clock be deactivated avoiding to the user manual?
>>>>>>Yes, the cpu main clock and peripherals clock are disabled in default in deep sleep mode.
3.Should I configure the clock once again after waking up from the deep sleep??
>>>>>>After waking-up, the internal 12MHz clock will be the default clock.
4.Is there any procedure I need to follow for configuring the main clock ??
>>>>>You can configure the main clock when the chip is in active mode.
5.In case I turn on the deep sleep mode and I don't give any wake-up interrupt ,how do i wake up the system ??
>>>>The chip will remain in deep sleep mode forever, in other words, you have to wake-up with interrupt event.
6.Any suggestion on how i should move forward .I need to make sure the module is in deep sleep mode only when a peripheral such as FLEXCOMM and gpio enables interrupt ,the system needs to wake up.
>>>>There is an example in SDK package:

Hope it can help you
BR
XiangJun Rong