Hello Rini Patel,
I´m sorry for confusing, I read FRDM-KL46Z. Unfortunately TWR-KL46Z48M is not supported in KSDK 1.1. neither KSDK 1.2.
Because of different pin configuration, there is considerable explanation.
For FRDM-KL46Z is needed KL46_USB_ID to ground through unpopulated resistor

while for TWR-KL46Z48M is KL46_USB_ID connected to PTC8

And it is the reason, why TWR-KL46Z does not work on FRDM-KL46Z.
I hope this helps,
Best Regards,
Iva