Hi Evgeny,
regardless what timer you are going to use, you will have some drift. The drift is caused by the fact that in tickless idle mode the timer is not continuously running, but the RTOS has to
a) stop the timer
b) update the timer modulo register with the new value
c) restart the timer
This for every tickless timer interrupt. Now how much the drift will be depends on the timer interrupt frequency.
The LPTMR adds some extra drift because the minimal time for the tick is 1 ms. So in the worst case you will be off up to 1ms for every timer tick. In my applications I have a drift in the range of or 10% using LPTMR, and in the range of 2-5% for high frequency SysTick timer.
Note that you can add a compensation with using configSTOPPED_TIMER_COMPENSATION.
More infos: Tickless Low power features in FreeRTOS and Low Power with FreeRTOS: Tickless Idle Mode | MCU on Eclipse
I hope this helps,
Erich