Hi
First of all, sorry for the so later reply.
What kind of USB application you are using? USB device or host? And please provide the part number you are using?
We could make a dedicated test on out evaluation board.
We don't find issues with USB application when USB cable connected after Flash was re-programmed.
We prefer to add 0.1uF capacitor to VREGIN pin, which will make USB work stable.
Wish it helps.
Have a great day,
Ma Hui
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