Hi Marceli
I don't know whether PE can generate such code, or whether it is then operational or not. There is however a USB host memory stick example in the MQX package - usually the examples are initially only operational on one procesor with a pre-defined IDE but you may be able to port it with some understanding and patience to your device and environment.
There is also USB host memory stick support and integrated utFAT for your device (and almost all other Kinetis parts) which can be used with any IDE (KDS, CW, IAR, Keil, Rowley, CooCox, Green Hills etc.) and allows (approx.) real-time memory stick simulation at:
http://www.utasker.com/kinetis/FRDM-KL46Z.html
http://www.utasker.com/kinetis/TWR-KL46Z48M.html
I would however also consider using SD cards (also supported for your device and can be used in parallel with memory sticks) since it is lower overhead for a KL46.
Regards
Mark