I'm sorry, I wasn't very clear.
I'd like to use the rising-edge of comparator output, but not to start the PWM, but to set/reset the signals. The PWM period remains the same, but width depends on when the comparator output becomes high. Perhaps the following picture will help:

In the picture, the first two waveforms are (roughly) complementary FTM outputs with dead-time. The red lines denote the period. The third waveform is one of the comparator inputs, and the last waveform is comparator output.
As you can see, I'd like to ignore the CnV value, and drive the PWM width through the comparator output. Is this possible at all?