Hi fabiobenevento
Do you mean, you want to download the firmware to the K64 without the IDE?
If yes, you totally can use the JLINK commander.
1. You can firmware your FRDM-K64 on board firmware to JLINK firmware
The JLINK firmware can be found from this link:
https://www.segger.com/downloads/jlink/OpenSDA_FRDM-K64F
2. Generate the app firmware with .bin,.hex, etc
3. install the JLINK driver
https://www.segger.com/downloads/jlink/JLink_Windows.exe
4. Use the JLINK commander to download the app firmware
commander is: loadfile app.bin 0x00
You need to connect the board at first.
Please try it on your side.
If you still have questions about it, please kindly let me know.
Best Regards,
Kerry