Hi,
Unfortunately there is no way to do that without modifying the MQX code.
One thing you can do is to add a new option in the ioctl of the driver you want to use.
You have to modify the uint_32 _kuart_polled_ioctl function in the serl_pol_kuart.c and add the command or option to change the pins to be used. Similar way as you modify the baud-rate, parity and other parameters.
Other way is to modify directly to the registers in the application, just like in a bareboard project.
I hope this helps.