Hi infoclog,
Each example includes a subdirectory named "LCF" and it includes both linker command files - Ram and Flash targets.
If you open a 560xB project in IDE (see the attachments) you will see the folder "Linker Configuration Files" which includes the .lcf files.
The active one depends on the target selected (the black dot in the target column) e.g. ADC_CTU-flash target uses 5500_VLE_flash.lcf"
A CodeWarrior project theoretically does not need any .lcf file if no complex linking is required e.g. there are no custom sections etc. You have to just define default addresses for Code, Data and Small data sections (see the second screenshot attached)
Anyway using .lcf file is highly recommended.
Stanish