Replace the "Target Initialization File" content with the ls1046ardb.py_2100&1600_pass.txt.
I could program the eMMC on the LS1046ARDB and the LS1046ARDB could bring up from the eMMC.
There is one mux control signal SD_eMMC_SEL on the LS1046ARDB, but it's decided by whether inserting SD card or not.
When you use the eMMC, please kindly don't insert SD card.