I have a MC9S08QE16 project and I am using CodeWarrior 11.1 and ProcessorExpert. The MCU communicates with a PCF2129 RTC via I2C. when I download and run the code using my Multilink Universal FX it waits for a flag to be set in the ISR (I have one for Tx and one for RX). The flag is cleared before the CI2C1_SendChar or Ci2C1_RecvBlock functions are called, the ISR sets the flag and the calling routine waits for the flag to be set, which never happens.
However, if I disconnect the the multilink cable from the target and then reconnect it the application runs without any problems - apart from the fact that I need to make changes to the code and the "debugging facility" is not connected - apart from the power..