Hi, Jerry:
It says in the data sheet that for buffered PWM operation, to set the MS0B pin, however, I was wondering if this was necessary to generate the PWM signal since I'm already using the PTA1(TCH1) pin for other things.
You need to set the MS0B bit to enable BUFFERED PWM. When you do, the PTA1(TCH1) pin is not used, and is available to the ADC. The PWM will be outputted on the PTA0(TCH0) pin.
Can PWM signals be generated from the TCLK pin as well . . . ?
If you mean "Can PWM signals be
output on the TCLK pin?", the answer is "No". If you mean "Can PWM signals be
based on a clock that is input into the TCLK pin?", the answer is "Absolutely".
. . . and will the PWM timer signal mess up just a free-running timing counter that I may have going on as well because of the TOF register?
Normally, you would not modify the free-running counter, and you can process the TOF normally without disturbing the PWM. They can operate independently if programmed correctly.