Hiii Yiping,
Thanks for your reply.
As i already tested bare board project for T4240RDB(Running connect/attach/Download as debug configuration is working).
1. I can see the dissassembly code also and able to read REGISTER set also. so i don't think issue is related to code warrior CWUSB tap driver.
2. Somewhere in the freescale Community it was mentioned that RCW Override will not work with OLD cpld code then i tried same setup with T4240RDB rev2
(latest cpld code i think so)...
On T4240RDB Rev2 Jtag Initialization working fine
(RCW Override is happning as i can see some status leds glowing on my PCIe card,before running RCW override using codewarrior all leds were in Off state)
but after that when codewarrior starts running " T4240RDB_init_core.tcl" , throws an error "Error Writing Memory".
3. "T4240RDB_RCW_1666_733_1867-rev2.0.txt" using this as jtag configuration file Rev2.
Any comments on this...??

Thanks
Abhishek Ojha