Thank you for your help. Checking...
Well...Indeed the DQS pin was connected so we left it floating. Also reduced the frequency.
.serialClkFreq = kFlexSpiSerialClk_30MHz,
Still can't run it properly.
But I've noticed something strange.
On power up I see no clock on the flesh clock pin. There is no reference from micro controller to the flesh chip on power up.
I tried BOOT_MODE pins - 00 and 01 - the same result.