Here you are steps to burn eMMC:
1. Place the images into mfgtools\Profiles\Linux\OS Firmware directory structure.
2. Update cfg.ini file with setting eMMC to burn
3. Set download mode with boot mode switches on the board
4. Connect the board to PC
5. Run MfgTool2.exe
6. Power the board, wait for MfgTool to detected the board and press "Start" button to dowload.
7. Set eMMC boot mode with the switches on the board
8. Make sute that the board boots up
Have a great day,
Victor
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