Hello,Emil,
NAND FLASH only supported by Sabre AI board, I guess your EVK board should be this one. If yes, you can open it's schematic, we can find NANDF_D0~NANDF_D3 pins have been iomuxed as Upper 4-bit signals of SD2 port. see following :

So on hardware, NAND FLASH pins conflict with those pins of SD2 port. If you really wants to use NAND FLASH, you can do like following:
(1) remove these resistors:
R649,R48,R647,R648,R680,R49.
(2)populate : R738,R755,R729,R727.
(3)U17(NLAS3158)
you don't need to change it's settings. because default setting is for NAND FLASH.
Try it please !
Regards,
Weidong