Hello Miroslav,
Just to be sure, did you update the Segger Driver on the KDS?
See "Note" in "2.3 PC Configuration" section under the Getting started website
Note: The DLL updater will update your KDS installation, but your KDS installation may not have been using the same path that was update. So, after the update runs your KDS installation may still be pointing to an outdated Segger driver. To ensure your KDS installation is pointing to the proper Segger driver, follow these steps to update the Jlink path variable in KDS.
-JC