This is an update to your question/request:
Secure Boot does not affect normal process, except PAMU cannot be in bypass mode.
From the Trust Architecture User Guide 2.0,
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3.1.2.1 PAMUs
The core's MMU settings determine which memory ranges are accessible by each
domain, and the hypervisor prevents these settings from being altered by operating
system or application software.
In order to prevent system masters other than the cores from reading or writing sensitive
memory regions, the chip implements a number of I/O MMUs, known as peripheral
access management units or PAMUs. The PAMUs prevent internal and external DMAs
(non-CPU masters) from accessing memory for which they have not been granted explicit
access permission.
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Which exactly modification was done? Is it possible that transaction for the target peripheral is blocked by PAMU?
Please check whether there is PAMU error. You can configure the PAMU interrupt to list out the PAMU status registers in case of access violation.
Make sure that there are enough entries for both primary and secondary tables. In U-Boot, primary and secondary tables are defined with static sizes which are defined in fsl_pamu.h file as:
#define NUM_PPAACT_ENTRIES 512
#define NUM_SPAACT_ENTRIES 256