Hi @Simon-Liu,
I'm sorry for the delay.
Please refer to the excerpt from the RM I posted in my last response.
There are examples of clock configurations in the RM, Section 24.7.2.
I would recommend using just the examples of clock configuration without any modifications.
If the examples are modified, it must be in a way where the ratios between the clock frequencies are maintained.
As I wrote beofre, I could not compile your project that seems to be rather complex.
If the recommended clock configuration does help, can you remove components from the project one by one to identify the root cause?
Thank you,
BR, Daniel