Hi@Samuel_DCosta
Please ignore the previous answer
1.Would the 'BCTU Trigger' be triggered every time the ADC is triggered by the BCTU (BCTU output trigger) or the eMIOS triggers the BCTU (BCTU input trigger)?
According to the BCTU MCR->TRGF register,it should be the fisrt one which is BCTU output trigger to ADC.

2.Also, if we have a MPC (cross trigger) where the 6 signals were triggered in the below way:
- signal 1 and signal 2 parallelly sampled
- signal 3 and signal 4 parallelly sampled
- signal 5 and signal 6 parallelly sampled
Would we still see the 'BCTU Trigger' triggered 6 times or 3?
This is related to your BCTU configuration. You need to give me a specific configuration so that I can answer your question.
In short, there is no problem with your project and your's understanding is right.
I modified your demo and tested it.(Please refer to the attachments)
The incorrect data order in the FIFO may be caused by the following reasons.
You will find that this is because there are some problems in the first cycle of PWM, which leads to inconsistent FIFO storage order.

I modified the trigger points of OPWMT to Ch3, Ch1, Ch2, the watermask value is 3, and the sampling is 4 times each time the trigger is triggered, for a total of 12 samples.
